Wiki under construction
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- Category: News
- Published on Tuesday, 20 December 2011 09:44
- Lassi Paavolainen
- Hits: 186
BioImageXD Wiki is currently unavailable. We hope to get updated Wiki running on 21st of December, 2011. When new Wiki is running, we'll start updating and adding new information to it, including the latest instructions for developers and users. We plan to use new Wiki considerably more than we used to including basic information, but also typical use cases to solve image analysis problems in BioImageXD.
Update (4th of January, 2012): Because of technical issues in our web server, Wiki will be unavailable for a while. We hope to get it back online as soon as possible.
BioImageXD 1.0 Release Candidate 1 released
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- Category: News
- Published on Thursday, 03 November 2011 22:12
- Lassi Paavolainen
- Hits: 353
BioImageXD 1.0RC1 is the first release candidate of official version 1.0 release. This means that all functionality is final, but there might still be some bugs that we will fix before releasing version 1.0. If you find any bugs, please report those to our bug tracker.
We provide packages for 32 and 64-bit Windows (Xp, Vista, 7), 64-bit Linux and 64-bit Mac OSX 10.6. Windows packages are installers for automatic installation. To use Linux or Mac OSX package, first extract package and then read either readme_linux.txt or readme_osx.txt for instructions to set LD_LIBRARY_PATH or DYLD_LIBRARY_PATH. Also Linux package needs Python 2.6 and wxPython 2.8.x installed where as Mac OSX package needs Python 2.7. Mac OSX 10.6 version might include more bugs than other packages. We plan to improve Mac version and also provide package for 10.7 (Lion) in coming months.
Changes since previous release (r1537):
- Versions for 64-bit Windows, 64-bit Linux and 64-bit Mac OSX 10.6.
- Getting started guide included in the software.
- Enhanced GUI functionality including descriptions and input/output image types for all filters.
- Support for 8/12/16/32 grayscale images, RGB images and 32/64-bit label images.
- MRC file format reader.
- Support for multipage TIFF files.
- Improved memory handling.
- Many fixed bugs.
- Updated libraries: VTK 5.6.1 and ITK 3.20.
- 3D visualization of multiple channels without grouping.
- Filters for deconvolution and mathematical generation of PSF.
- Possibility for FRAP analysis.
- Many new registrations filters.
- Fourier and Inverse Fourier transforms. Low and high pass filters.
- Filter to remove background gradient from images.
- Difference of Gaussians filter for improved spot detection.
- Possibility to filter objects by size, border connection and roundness.
New filters in procedure list task (21):
- Mean (smoothing)
- PSF generation (deconvolution)
- Iterative deconvolution (deconvolution)
- Difference of Gaussians (spot detection)
- Binary thinning (3D skeleton of binary data)
- FFT, Inverse FFT, Butterworth low pass, Butterworth high pass, Ideal low pass, Ideal high pass
- Non-uniform illumination correction (to remove background gradient)
- Filter objects (remove labeled objects)
- FRAP analysis
- Versor rigid registration, Rigid registration 2D, Deformable registration, Translation registration 2D, Slices translation registration
- Combine images (compute single image from two)
- Extract components (extract components of RGB image)
Enhanced website launched
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- Category: News
- Published on Thursday, 03 November 2011 22:11
- Lassi Paavolainen
- Hits: 297
Face lifted BioImageXD website launched November 4, 2011.
News